Articles

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  Issues in Research Software

  Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4)

  Daniel S.   Katz ,  Kyle E.   Niemeyer ,  Sandra   Gesing ,  Lorraine   Hwang ,  Wolfgang   Bangerth ,  Simon   Hettrick ,  Ray   Idaszak ,  Jean   Salac ,  Neil   Chue Hong ,  Santiago   Núñez-Corrales ,  Alice   Allen ,  R. Stuart   Geiger ,  Jonah   Miller ,  Emily   Chen ,  Anshu   Dubey ,  Patricia   Lago

  • PDF (EN)
  • XML (EN)

  15 Feb 2018

  6 ( 1 ) : 10
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  Software Metapapers

  Tethys – A Python Package for Spatial and Temporal Downscaling of Global Water Withdrawals

  Xinya   Li ,  Chris R.   Vernon ,  Mohamad I.   Hejazi ,  Robert P.   Link ,  Zhongwei   Huang ,  Lu   Liu ,  Leyang   Feng

  • PDF (EN)
  • XML (EN)

  09 Feb 2018

  6 ( 1 ) : 9
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  Software Metapapers

  webMUSHRA — A Comprehensive Framework for Web-based Listening Tests

  Michael   Schoeffler ,  Sarah   Bartoschek ,  Fabian-Robert   Stöter ,  Marlene   Roess ,  Susanne   Westphal ,  Bernd   Edler ,  Jürgen   Herre

  • PDF (EN)
  • XML (EN)

  05 Feb 2018

  6 ( 1 ) : 8
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  Software Metapapers

  PLEASE: The Python Low-energy Electron Analysis SuitE – Enabling Rapid Analysis of LEEM and LEED Data

  Maxwell   Grady ,  Zhongwei   Dai ,  Karsten   Pohl

  • PDF (EN)
  • XML (EN)

  05 Feb 2018

  6 ( 1 ) : 7
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  Software Metapapers

  A Random-Dot Kinematogram for Web-Based Vision Research

  Sivananda   Rajananda ,  Hakwan   Lau ,  Brian   Odegaard

  • XML (EN)
  • PDF (EN)

  27 Jan 2018

  6 ( 1 ) : 6
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  Software Metapapers

  pyObs: Open-Source Software for Computer-Assisted Behavioral Observation Coding

  William   Griffin

  • XML (EN)
  • PDF (EN)

  26 Jan 2018

  6 ( 1 ) : 5
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  Software Metapapers

  PyPSA: Python for Power System Analysis

  
  

  Thomas   Brown ,  Jonas   Hörsch ,  David   Schlachtberger

  • PDF (EN)
  • XML (EN)

  16 Jan 2018

  6 ( 1 ) : 4
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  Software Metapapers

  Quandle and Biquandle Homology Calculation in R

  
  

  Roger   Fenn ,  Ansgar   Wenzel

  • PDF (EN)
  • XML (EN)

  16 Jan 2018

  6 ( 1 ) : 3
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  Software Metapapers

  An Octave/MATLAB® Interface for Rapid Processing of SMOS L1C Full Polarization Brightness Temperature

  Pablo   Saavedra ,  Clemens   Simmer

  • PDF (EN)
  • XML (EN)

  08 Jan 2018

  6 ( 1 ) : 2
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  Software Metapapers

  ConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis

  Xavier   Barbeau ,  Antony T.   Vincent ,  Patrick   Lagüe

  • PDF (EN)
  • XML (EN)

  08 Jan 2018

  6 ( 1 ) : 1
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  Software Metapapers

  BayesTwin: An R Package for Bayesian Inference of Item-Level Twin Data

  Inga   Schwabe

  • PDF (EN)
  • XML (EN)

  14 Nov 2017

  5 ( 1 ) : 33
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  Issues in Research Software

  Reproducibility in Research: Systems, Infrastructure, Culture

  Tom   Crick ,  Benjamin   Hall ,  Samin   Ishtiaq

  • PDF (EN)
  • XML (EN)

  09 Nov 2017

  5 ( 1 ) : 32
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  Software Metapapers

  ImageSURF: An ImageJ Plugin for Batch Pixel-Based Image Segmentation Using Random Forests

  Aidan   O'Mara ,  Anna E.   King ,  James C.   Vickers ,  Matthew T. K.   Kirkcaldie

  • PDF (EN)
  • XML (EN)

  06 Nov 2017

  5 ( 1 ) : 31
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  Software Metapapers

  Jug: Software for Parallel Reproducible Computation in Python

  Luis Pedro   Coelho

  • PDF (EN)
  • XML (EN)

  27 Oct 2017

  5 ( 1 ) : 30
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  Software Metapapers

  OpenOpticalFlow: An Open Source Program for Extraction of Velocity Fields from Flow Visualization Images

  Tianshu   Liu

  • PDF (EN)
  • XML (EN)

  20 Oct 2017

  5 ( 1 ) : 29
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  Software Metapapers

  DSCImageCalc – Software for Determining Similarity Coefficients for the Analysis of Image Segmentations

  Tom   Lawton

  • PDF (EN)
  • XML (EN)

  18 Oct 2017

  5 ( 1 ) : 28
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  Software Metapapers

  GIFT-Grab: Real-time C++ and Python multi-channel video capture, processing and encoding API

  Dzhoshkun Ismail   Shakir ,  Luis Carlos   García-Peraza-Herrera ,  Pankaj   Daga ,  Tom   Doel ,  Matthew J.   Clarkson ,  Sébastien   Ourselin ,  Tom   Vercauteren

  • PDF (EN)
  • XML (EN)

  09 Oct 2017

  5 ( 1 ) : 27
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  Software Metapapers

  The Giles Ecosystem – Storage, Text Extraction, and OCR of Documents

  Julia   Damerow ,  B. R. Erick   Peirson ,  Manfred D.   Laubichler

  • PDF (EN)
  • XML (EN)

  28 Sep 2017

  5 ( 1 ) : 26
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  Software Metapapers

  ATUS-Commuting: Stata Code to Calculate Commuting Time in the American Time Use Survey

  Gray   Kimbrough

  • PDF (EN)
  • XML (EN)

  25 Sep 2017

  5 ( 1 ) : 25
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  Software Metapapers

  GENESIS – The GENEric SImulation System for Modelling State Transitions

  Matthew S.   Gillman

  • PDF (EN)
  • XML (EN)

  20 Sep 2017

  5 ( 1 ) : 24
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  Software Metapapers

  VScope — Data Acquisition and Analysis for Voltage-sensitive Dye Imaging Using Multiple Cameras and Electrophysiology

  Daniel A.   Wagenaar

  • PDF (EN)
  • XML (EN)

  13 Sep 2017

  5 ( 1 ) : 23
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  Software Metapapers

  Picasso: A Modular Framework for Visualizing the Learning Process of Neural Network Image Classifiers

  Ryan   Henderson ,  Rasmus   Rothe

  • PDF (EN)
  • XML (EN)

  11 Sep 2017

  5 ( 1 ) : 22
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  Software Metapapers

  Xanthos – A Global Hydrologic Model

  
  

  Xinya   Li ,  Chris R.   Vernon ,  Mohamad I.   Hejazi ,  Robert P.   Link ,  Leyang   Feng ,  Yaling   Liu ,  Lynn T.   Rauchenstein

  • PDF (EN)
  • XML (EN)

  11 Sep 2017

  5 ( 1 ) : 21
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  Software Metapapers

  Web Tool for Navigating and Plotting SomaLogic ADAT Files

  Foo   Cheung ,  Giovanna   Fantoni ,  Maria   Conner ,  Brian A.   Sellers ,  Yuri   Kotliarov ,  Julián   Candia ,  Katherine   Stagliano ,  Angélique   Biancotto

  • PDF (EN)
  • XML (EN)

  08 Sep 2017

  5 ( 1 ) : 20
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  Software Metapapers

  NeuroCharter: A Neural Networks Software to Visually Discover the Effects and Contributions between Interrelated Features

  Mohammad N.   Elnesr ,  A. A.   Alazba

  • PDF (EN)
  • XML (EN)

  04 Sep 2017

  5 ( 1 ) : 19