Articles

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  Software Metapapers

  Simple RGC: ImageJ Plugins for Counting Retinal Ganglion Cells and Determining the Transduction Efficiency of Viral Vectors in Retinal Wholemounts

  Tiger Cross, Rasika Navarange, Joon-Ho Son, William Burr, Arjun Singh, Kelvin Zhang, Miruna Rusu, Konstantinos Gkoutzis, Andrew Osborne, Bart Nieuwenhuis

  • PDF (EN)
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  09 Jun 2021

  9 ( 1 ) : 15
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  Software Metapapers

  Python Battery Mathematical Modelling (PyBaMM)

  
  

  Valentin Sulzer, Scott G. Marquis, Robert Timms, Martin Robinson, S. Jon Chapman

  • PDF (EN)
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  08 Jun 2021

  9 ( 1 ) : 14
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  Software Metapapers

  Introduction to Freva – A Free Evaluation System Framework for Earth System Modeling

  Christopher Kadow, Sebastian Illing, Etor E. Lucio-Eceiza, Martin Bergemann, Mahesh Ramadoss, Philipp S. Sommer, Oliver Kunst, Thomas Schartner, Klaus Pankatz, Jens Grieger, Mareike Schuster, Andy Richling, Hannes Thiemann, Ingo Kirchner, Henning W Rust, Thomas Ludwig, Ulrich Cubasch, Uwe Ulbrich

  • PDF (EN)
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  02 Jun 2021

  9 ( 1 ) : 13
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  Software Metapapers

  Particle Image Velocimetry for MATLAB: Accuracy and enhanced algorithms in PIVlab

  William Thielicke, René Sonntag

  • PDF (EN)
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  31 May 2021

  9 ( 1 ) : 12
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  Software Metapapers

  FastGAPP – A MATLABBased Program Supports Earth Scientists Interpreting Geochemical, Petrological and Sedimentological Data

  Florian Riefstahl, Felix Gross

  • PDF (EN)
  • XML (EN)

  31 May 2021

  9 ( 1 ) : 11
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  Software Metapapers

  Embo: a Python package for empirical data analysis using the Information Bottleneck

  Eugenio Piasini, Alexandre L. S. Filipowicz, Jonathan Levine, Joshua I. Gold

  • PDF (EN)
  • XML (EN)

  31 May 2021

  9 ( 1 ) : 10
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  Software Metapapers

  A Python Package to Calculate the OLR-Based Index of the Madden- Julian-Oscillation (OMI) in Climate Science and Weather Forecasting

  Christoph G. Hoffmann, George N. Kiladis, Maria Gehne, Christian von Savigny

  • PDF (EN)
  • XML (EN)

  14 May 2021

  9 ( 1 ) : 9
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  Software Metapapers

  Pymrio – A Python Based Multi-Regional Input-Output Analysis Toolbox

  Konstantin Stadler

  • PDF (EN)
  • XML (EN)

  11 May 2021

  9 ( 1 ) : 8
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  Software Metapapers

  VIFECO: An Open-Source Software for Counting Features on a Video

  Philippe Apparicio, David Maignan, Jérémy Gelb

  • PDF (EN)
  • XML (EN)

  07 May 2021

  9 ( 1 ) : 7
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  Issues in Research Software

  oemof.tabular – Introducing Data Packages for Reproducible Workflows in Energy System Modeling

  Simon Hilpert, Stephan Günther, Martin Söthe

  • PDF (EN)
  • XML (EN)

  05 May 2021

  9 ( 1 ) : 6
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  Issues in Research Software

  Sustainable Research Software Hand-Over

  
  

  J. Fehr, C. Himpe, S. Rave, J. Saak

  • PDF (EN)
  • XML (EN)

  30 Apr 2021

  9 ( 1 ) : 5
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  Software Metapapers

  PBTK Optimizer: An Open Source Application for PBTK Model Parameter Optimization in Python

  Ian Edhlund, Matthew Macauley, Cindy Lee

  • PDF (EN)
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  14 Apr 2021

  9 ( 1 ) : 4
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  Software Metapapers

  OpenOpticalFlow_PIV: An Open Source Program Integrating Optical Flow Method with Cross- Correlation Method for Particle Image Velocimetry

  Tianshu Liu, David M. Salazar

  • PDF (EN)
  • XML (EN)

  05 Feb 2021

  9 ( 1 ) : 3
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  Software Metapapers

  Smurf: System for Modelling with Uncertainty Reduction, and Forecasting

  Isabelle Mirouze, Sophie Ricci

  • PDF (EN)
  • XML (EN)

  05 Feb 2021

  9 ( 1 ) : 2
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  Software Metapapers

  BayesFactorFMRI: Implementing Bayesian Second-Level fMRI Analysis with Multiple Comparison Correction and Bayesian Meta-Analysis of fMRI Images with Multiprocessing

  Hyemin Han

  • PDF (EN)
  • XML (EN)

  02 Feb 2021

  9 ( 1 ) : 1
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  Software Metapapers

  GuiTeNet: A Graphical User Interface for Tensor Networks

  Lisa Sahlmann, Christian B. Mendl

  • PDF (EN)
  • XML (EN)

  15 Dec 2020

  8 ( 1 ) : 29
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  Software Metapapers

  Pyrad: A Real-Time Weather Radar Data Processing Framework Based on Py-ART

  Jordi Figueras i Ventura, Martin Lainer, Zaira Schauwecker, Jacopo Grazioli, Urs Germann

  • PDF (EN)
  • XML (EN)

  08 Oct 2020

  8 ( 1 ) : 28
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  Software Metapapers

  EIT-MESHER – Segmented FEM Mesh Generation and Refinement

  Thomas Dowrick, James Avery, Mayo Faulkner, David Holder, Kirill Aristovich

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 27
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  Software Metapapers

  BoolSi: A Tool for Distributed Simulations and Analysis of Boolean Networks

  Vladyslav Oles, Anton Kukushkin

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 26
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  Software Metapapers

  COMPLEX-IT: A Case-Based Modelling and Scenario Simulation Platform for Social Inquiry

  Corey Schimpf, Brian Castellani

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 25
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  Software Metapapers

  DoE.MIParray: An R Package for Algorithmic Creation of Orthogonal Arrays

  Ulrike Grömping

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 24
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  Software Metapapers

  pyfMRIqc: A Software Package for Raw fMRI Data Quality Assurance

  Brendan Williams, Michael Lindner

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 23
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  Software Metapapers

  Using SAS Macros for Multiple Mediation Analysis in R

  
  

  Paige Fisher, Wentao Cao, Qingzhao Yu

  • PDF (EN)
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  07 Oct 2020

  8 ( 1 ) : 22
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  Software Metapapers

  Exploring and Comparing Unsupervised Clustering Algorithms

  Marc Lavielle, Philip D. Waggoner

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 21
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  Software Metapapers

  PyDDA: A Pythonic Direct Data Assimilation Framework for Wind Retrievals

  Robert Jackson, Scott Collis, Timothy Lang, Corey Potvin, Todd Munson

  • PDF (EN)
  • XML (EN)

  07 Oct 2020

  8 ( 1 ) : 20