Articles

Issues in Research Software
A Scientist’s Perspective on Sustainable Scientific Software

Brian Blanton, Chris Lenhardt

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e17
Issues in Research Software
Simplifying the Development, Use and Sustainability of HPC Software

Jeremy Cohen, Chris Cantwell, Neil Chue Hong, David Moxey, Malcolm Illingworth, Andrew Turner, John Darlington, Spencer Sherwin

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e16
Issues in Research Software
Data Management Lifecycle and Software Lifecycle Management in the Context of Conducting Science

W Lenhardt, Stanley Ahalt, Brian Blanton, Laura Christopherson, Ray Idaszak

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e15
Issues in Research Software
Software Abstractions and Methodologies for HPC Simulation Codes on Future Architectures

Anshu Dubey, Steve Brandt, Richard Brower, Merle Giles, Paul Hovland, Donald Lamb, Frank Löffler, Boyana Norris, Brian O'Shea, Claudio Rebbi, Marc Snir, Rajeev Thakur, Petros Tzeferacos

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e14
Issues in Research Software
A Framework for Discussing e-Research Infrastructure Sustainability

Daniel Katz, David Proctor

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e13
Issues in Research Software
Cactus: Issues for Sustainable Simulation Software

Frank Löffler, Steven Brandt, Gabrielle Allen, Erik Schnetter

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e12
Issues in Research Software
Fourteen Years of R/qtl: Just Barely Sustainable

Karl Broman

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e11
Issues in Research Software
Continuous Integration for Concurrent Computational Framework and Application Development

Derek Gaston, John Peterson, Cody Permann, David Andrs, Andrew Slaughter, Jason Miller

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e10
Issues in Research Software
Extensible Generic Data Management Software

Reagan Moore, Arcot Rajasekar, Hao Xu

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e9
Issues in Research Software
The Blind Men and the Elephant: Towards an Empirical Evaluation Framework for Software Sustainability

Colin Venters, Lydia Lau, Michael Griffiths, Violeta Holmes, Rupert Ward, Caroline Jay, Charlie Dibsdale, Jie Xu

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e8
Issues in Research Software
Experiences from Software Engineering of Large Scale AMR Multiphysics Code Frameworks

Anshu Dubey, Brian Van Straalen

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e7
Issues in Research Software
Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1)

Daniel Katz, Sou-Cheng Choi, Hilmar Lapp, Ketan Maheshwari, Frank Löffler, Matthew Turk, Marcus Hanwell, Nancy Wilkins-Diehr, James Hetherington, James Howison, Shel Swenson, Gabrielle Allen, Anne Elster, Bruce Berriman, Colin Venters

Special Collection: Working towards Sustainable Software for Science: Practice and Experiences
- XML (EN)
- PDF (EN)
09 Jul 2014

2 ( 1 ) : e6
Software Metapapers
CARMA: Software for Continuous Affect Rating and Media Annotation

Jeffrey Girard
- XML (EN)
- PDF (EN)
03 Jul 2014

2 ( 1 ) : e5
Software Metapapers
Scientific Visualisation of Atmospheric Data with ParaView

Martin Jucker
- XML (EN)
- PDF (EN)
03 Jun 2014

2 ( 1 ) : e4
Software Metapapers
Computerized Testing Software for Assessing Interference Suppression in Children and Adults: The Bivalent Shape Task (BST)

Shane Mueller, Alena Esposito
- XML (EN)
- PDF (EN)
23 May 2014

2 ( 1 ) : e3
Software Metapapers
LIIS: A web-based system for culture collections and sample annotation

Matthew Forster, Lyn Paterson, Robert Forster
- XML (EN)
- PDF (EN)
08 Apr 2014

2 ( 1 ) : e2
Software Metapapers
AvoPlot: An extensible scientific plotting tool based on matplotlib

Nial Peters
- XML (EN)
- PDF (EN)
10 Feb 2014

2 ( 1 ) : e1
Software Metapapers
MPWide: a light-weight library for efficient message passing over wide area networks

Derek Groen, Steven Rieder, Simon Portegies Zwart
- XML (EN)
- PDF (EN)
20 Dec 2013

1 ( 1 ) : e9
Software Metapapers
Madagascar: open-source software project for multidimensional data analysis and reproducible computational experiments

Sergey Fomel, Paul Sava, Ioan Vlad, Yang Liu, Vladimir Bashkardin
- XML (EN)
- PDF (EN)
21 Nov 2013

1 ( 1 ) : e8
Software Metapapers
Feature Usage Explorer: Usage Monitoring and Visualization Tool in HTML5 Based Applications

Sarunas Marciuska, Pekka Abrahamsson
- XML (EN)
- PDF (EN)
18 Oct 2013

1 ( 1 ) : e7
Software Metapapers
IJBlob: An ImageJ Library for Connected Component Analysis and Shape Analysis

Thorsten Wagner, Hans-Gerd Lipinski
- XML (EN)
- PDF (EN)
14 Oct 2013

1 ( 1 ) : e6
Software Metapapers
OACoder: Postcode Coding Tool

Muhammad Adnan, Alex Singleton, Paul Longley
- XML (EN)
- PDF (EN)
08 Oct 2013

1 ( 1 ) : e5
Software Metapapers
A Web-based modeling tool for the SEMAT Essence theory of software engineering

Daniel Graziotin, Pekka Abrahamsson
- XML (EN)
- PDF (EN)
02 Sep 2013

1 ( 1 ) : e4
Software Metapapers
Mahotas: Open source software for scriptable computer vision

Luis Pedro Coelho
- XML (EN)
- PDF (EN)
29 Jul 2013

1 ( 1 ) : e3
Software Metapapers
Drosophila Photo-transduction Simulator

Konstantin Nikolic, Joaquim Loizu
- XML (EN)
- PDF (EN)
14 Apr 2013

1 ( 1 ) : e1

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