Software Metapapers
Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models
Authors:
- Edward D. Lee
- Bryan C. DanielsEmail Bryan C. Daniels
Abstract
ConIII (pronounced CON-ee) is an open-source Python project providing a simple interface to solving the pairwise and higher order Ising model and a base for extension to other maximum entropy models. We describe the maximum entropy problem and give an overview of the algorithms that are implemented as part of ConIII (https://github.com/eltrompetero/coniii) including Monte Carlo histogram, pseudolikelihood, minimum probability flow, a regularized mean field method, and a cluster expansion method. Our goal is to make a variety of maximum entropy techniques accessible to those unfamiliar with the techniques and accelerate workflow for users.
Funding Statement: EDL was supported by an NSF Graduate Fellowship under grant no. DGE-1650441. This research was supported in part by a congressional research grant provided by the Dirksen Congressional Center.
- Year: 2019
- Volume: 7 Issue: 1
- Page/Article: 3
- DOI: 10.5334/jors.217
- Submitted on 29 Jan 2018
- Accepted on 14 Feb 2019
- Published on 4 Mar 2019
- Peer Reviewed