Volume 6 -

Issue 1 - 2018

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Software Metapapers

ConfBuster: Open-Source Tools for Macrocycle Conformational Search and Analysis

Xavier Barbeau, Antony T. Vincent, Patrick Lagüe
- PDF (EN)
- XML (EN)
08 Jan 2018

6(1):1
An Octave/MATLAB® Interface for Rapid Processing of SMOS L1C Full Polarization Brightness Temperature

Pablo Saavedra, Clemens Simmer
- PDF (EN)
- XML (EN)
08 Jan 2018

6(1):2
Quandle and Biquandle Homology Calculation in R

Roger Fenn, Ansgar Wenzel
- PDF (EN)
- XML (EN)
16 Jan 2018

6(1):3
PyPSA: Python for Power System Analysis

Thomas Brown, Jonas Hörsch, David Schlachtberger
- PDF (EN)
- XML (EN)
16 Jan 2018

6(1):4
pyObs: Open-Source Software for Computer-Assisted Behavioral Observation Coding

William Griffin
- XML (EN)
- PDF (EN)
26 Jan 2018

6(1):5
A Random-Dot Kinematogram for Web-Based Vision Research

Sivananda Rajananda, Hakwan Lau, Brian Odegaard
- XML (EN)
- PDF (EN)
27 Jan 2018

6(1):6
PLEASE: The Python Low-energy Electron Analysis SuitE – Enabling Rapid Analysis of LEEM and LEED Data

Maxwell Grady, Zhongwei Dai, Karsten Pohl
- PDF (EN)
- XML (EN)
05 Feb 2018

6(1):7
webMUSHRA — A Comprehensive Framework for Web-based Listening Tests

Michael Schoeffler, Sarah Bartoschek, Fabian-Robert Stöter, Marlene Roess, Susanne Westphal, Bernd Edler, Jürgen Herre
- PDF (EN)
- XML (EN)
05 Feb 2018

6(1):8
Tethys – A Python Package for Spatial and Temporal Downscaling of Global Water Withdrawals

Xinya Li, Chris R. Vernon, Mohamad I. Hejazi, Robert P. Link, Zhongwei Huang, Lu Liu, Leyang Feng
- PDF (EN)
- XML (EN)
09 Feb 2018

6(1):9
RWebData: A High-Level Interface to the Programmable Web

Ulrich Matter
- PDF (EN)
- XML (EN)
21 Feb 2018

6(1):11
BALTRAD Advanced Weather Radar Networking

Daniel Michelson, Anders Henja, Sander Ernes, Günther Haase, Jarmo Koistinen, Katarzyna Ośródka, Tuomas Peltonen, Maciej Szewczykowski, Jan Szturc
- PDF (EN)
- XML (EN)
19 Mar 2018

6(1):12
InDEx: Open Source iOS and Android Software for Self-Reporting and Monitoring of Alcohol Consumption

Daniel Leightley, Jo-Anne Puddephatt, Laura Goodwin, Roberto Rona, Nicola T. Fear
- PDF (EN)
- XML (EN)
23 Mar 2018

6(1):13
DiViDu – An Open Source Solution for Dual Task Experiments with Integrated Divided Visual Field Paradigm

Nina Heck, Moritz Schubotz
- PDF (EN)
- XML (EN)
06 Apr 2018

6(1):14
Demeter – A Land Use and Land Cover Change Disaggregation Model

Chris R. Vernon, Yannick Le Page, Min Chen, Maoyi Huang, Katherine V. Calvin, Ian P. Kraucunas, Caleb J. Braun
- PDF (EN)
- XML (EN)
20 Apr 2018

6(1):15
Myex: A MATLAB Interface for the Tobii Eyex Eye-Tracker

Pete Richard Jones
- PDF (EN)
- XML (EN)
20 Apr 2018

6(1):16
Simple Monte Carlo Simulator for Modelling Linear Mode and Geiger Mode Avalanche Photodiodes in C++

Jonathan Petticrew, Simon Dimler, Jo Shien Ng
- XML (EN)
- PDF (EN)
18 May 2018

6(1):17
Billie. A Prototypical Framework for Building Information Model Visualization

Helga Tauscher
- XML (EN)
- PDF (EN)
18 May 2018

6(1):18
BEAT 3.0 – a Tool for Integrated Biodiversity Assessments

Henrik Nygård, Ciarán Murray, Jesper H. Andersen, Georg Martin, Kaire Torn, Samuli Korpinen
- PDF (EN)
- XML (EN)
02 Aug 2018

6(1):19
CERF – A Geospatial Model for Assessing Future Energy Production Technology Expansion Feasibility

Chris R. Vernon, Nino Zuljevic, Jennie S. Rice, Timothy E. Seiple, Michael C. W. Kintner-Meyer, Nathalie Voisin, Ian P. Kraucunas, Jin Chunlian, Jarrod Olson, Laurel Schmidt, Scott L. Morris, Pralit Patel
- PDF (EN)
- XML (EN)
06 Aug 2018

6(1):20
vaCATE: A Platform for Automating Data Output from Compartmental Analysis by Tracer Efflux

Rubens Flam-Shepherd, Dev T. Britto, Herbert J. Kronzucker
- PDF (EN)
- XML (EN)
17 Aug 2018

6(1):21
Fidimag – A Finite Difference Atomistic and Micromagnetic Simulation Package

Marc-Antonio Bisotti, David Cortés-Ortuño, Ryan Pepper, Weiwei Wang, Marijan Beg, Thomas Kluyver, Hans Fangohr
- PDF (EN)
- XML (EN)
06 Sep 2018

6(1):22
Turbulucid: A Python Package for Post-Processing of Fluid Flow Simulations

Timofey Mukha
- PDF (EN)
- XML (EN)
02 Nov 2018

6(1):23
Building Mathematical Models of Biological Systems with modelbase

Oliver Ebenhöh, Marvin van Aalst, Nima P. Saadat, Tim Nies, Anna Matuszyńska
- PDF (EN)
- XML (EN)
16 Nov 2018

6(1):24
Turtle Sport: An Open-Source Software for Communicating with GPS Sport Watches

Philippe Apparicio, Denis Apparicio, Marie-Ève Mathieu
- PDF (EN)
- XML (EN)
06 Dec 2018

6(1):25
ugtm: A Python Package for Data Modeling and Visualization Using Generative Topographic Mapping

Héléna Alexandra Gaspar
- PDF (EN)
- XML (EN)
19 Dec 2018

6(1):26
QuestPlus: A MATLAB Implementation of the QUEST+ adaptive Psychometric Method

Pete Richard Jones
- PDF (EN)
- XML (EN)
28 Dec 2018

6(1):27

Issues in Research Software

Fourth Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE4)

Daniel S. Katz, Kyle E. Niemeyer, Sandra Gesing, Lorraine Hwang, Wolfgang Bangerth, Simon Hettrick, Ray Idaszak, Jean Salac, Neil Chue Hong, Santiago Núñez-Corrales, Alice Allen, R. Stuart Geiger, Jonah Miller, Emily Chen, Anshu Dubey, Patricia Lago
- PDF (EN)
- XML (EN)
15 Feb 2018

6(1):10

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