Volume 4 -

Issue 1 - 2016

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Software Metapapers

Longbow: A Lightweight Remote Job Submission Tool

James Gebbie-Rayet, Gareth Shannon, Hannes H. Loeffler, Charles A. Laughton
- XML (EN)
- PDF (EN)
27 Jan 2016

4(1):e1
Free and Open-source Control Software for 3-D Motion and Processing

Bas Wijnen, Gerald C. Anzalone, Amberlee S. Haselhuhn, P. G. Sanders, Joshua M. Pearce
- XML (EN)
- PDF (EN)
27 Jan 2016

4(1):e2
Pendent_Drop: An ImageJ Plugin to Measure the Surface Tension from an Image of a Pendent Drop

Adrian Daerr, Adrien Mogne
- XML (EN)
- PDF (EN)
28 Jan 2016

4(1):e3
Vespucci: A Free, Cross-Platform Tool for Spectroscopic Data Analysis and Imaging

Daniel P. Foose, Ioana E. P. Sizemore
- XML (EN)
- PDF (EN)
29 Jan 2016

4(1):e4
ScatterJn: An ImageJ Plugin for Scatterplot-Matrix Analysis and Classification of Spatially Resolved Analytical Microscopy Data

Fabian Zeitvogel, Martin Obst
- XML (EN)
- PDF (EN)
03 Feb 2016

4(1):e5
MATH: A Scientific Tool for Numerical Methods Calculation and Visualization

Henrich Glaser-Opitz, Kristína Budajová
- XML (EN)
- PDF (EN)
10 Feb 2016

4(1):e6
ecg-kit: a Matlab Toolbox for Cardiovascular Signal Processing

Andrés Demski, Mariano Llamedo Soria
- XML (EN)
- PDF (EN)
04 Apr 2016

4(1):e8
DataExplore: An Application for General Data Analysis in Research and Education

Damien Farrell
- XML (EN)
- PDF (EN)
22 Mar 2016

4(1):e9
Benthic Photo Survey: Software for Geotagging, Depth-tagging, and Classifying Photos from Survey Data and Producing Shapefiles for Habitat Mapping in GIS

Jared Kibele
- XML (EN)
- PDF (EN)
23 Mar 2016

4(1):e10
VIGoR: Variational Bayesian Inference for Genome-Wide Regression

Akio Onogi, Hiroyoshi Iwata
- XML (EN)
- PDF (EN)
04 Apr 2016

4(1):e11
Perprof-py: A Python Package for Performance Profile of Mathematical Optimization Software

Abel Soares Siqueira, Raniere Costa da Silva, Luiz-Rafael Santos
- XML (EN)
- PDF (EN)
22 Apr 2016

4(1):e12
Moosh: A Numerical Swiss Army Knife for the Optics of Multilayers in Octave/Matlab

Josselin Defrance, Caroline Lemaître, Rabih Ajib, Jessica Benedicto, Emilien Mallet, Rémi Pollès, Jean-Pierre Plumey, Martine Mihailovic, Emmanuel Centeno, Cristian Ciracì, David Smith, Antoine Moreau
- XML (EN)
- PDF (EN)
22 Apr 2016

4(1):e13
eofs: A Library for EOF Analysis of Meteorological, Oceanographic, and Climate Data

Andrew Dawson
- XML (EN)
- PDF (EN)
26 Apr 2016

4(1):e14
CowLog – Cross-Platform Application for Coding Behaviours from Video

Matti Pastell
- XML (EN)
- PDF (EN)
27 Apr 2016

4(1):e15
Manual Whisker Annotator (MWA): A Modular Open-Source Tool

Brett Hewitt, Moi Hoon Yap, Robyn Grant
- XML (EN)
- PDF (EN)
28 Apr 2016

4(1):e16
MiToBo - A Toolbox for Image Processing and Analysis

Birgit Möller, Markus Glaß, Danny Misiak, Stefan Posch
- XML (EN)
- PDF (EN)
28 Apr 2016

4(1):e17
PerfAndPubTools – Tools for Software Performance Analysis and Publishing of Results

Nuno Fachada, Vitor Lopes, Rui Martins, Agostinho Rosa
- XML (EN)
- PDF (EN)
12 May 2016

4(1):e18
SeFo: A Package for Generating Probabilistic Forecasts from NMME Predictive Ensembles

Nir Krakauer
- XML (EN)
- PDF (EN)
20 May 2016

4(1):e19
OutlierFlag: A Tool for Scientific Data Quality Control by Outlier Data Flagging

Shuai Huang, Yaqiang Wang, Yuanli Xie, Peng Zhao, Johannes Lüers
- XML (EN)
- PDF (EN)
31 May 2016

4(1):e20
Open Source Software for Mapping Human Impacts on Marine Ecosystems with an Additive Model

Andy Stock
- XML (EN)
- PDF (EN)
07 Jun 2016

4(1):e21
PyVDT: A PsychoPy-Based Visual Sequence Detection Task

Mads Hansen
- XML (EN)
- PDF (EN)
10 Jun 2016

4(1):e22
Particle Data Management Software for 3DParticle Tracking Velocimetry and Related Applications – The Flowtracks Package

Yosef Meller, Alex Liberzon
- XML (EN)
- PDF (EN)
16 Jun 2016

4(1):e23
The Python ARM Radar Toolkit (Py-ART), a Library for Working with Weather Radar Data in the Python Programming Language

Jonathan Helmus, Scott Collis
- XML (EN)
- PDF (EN)
18 Jul 2016

4(1):e25
Parchar – Characterization of Suspended Particles Through Image Processing in Matlab

Thor Markussen
- XML (EN)
- PDF (EN)
19 Jul 2016

4(1):e26
KAMG: A Tool for Converting Blood Ties and Affinity Ties into Adjacency Matrices

Hang Xiong, Pin Xiong, Hui Xiong
- XML (EN)
- PDF (EN)
19 Jul 2016

4(1):e28
Webcharts – A Web-based Charting Library for Custom Interactive Data Visualization

Nathan Bryant, Jeremy Wildfire
- XML (EN)
- PDF (EN)
19 Jul 2016

4(1):e29
Efficient n-gram, Skipgram and Flexgram Modelling with Colibri Core

Maarten van Gompel, Antal van den Bosch
- XML (EN)
- PDF (EN)
02 Aug 2016

4(1):e30
Windspharm: A High-Level Library for Global Wind Field Computations Using Spherical Harmonics

Andrew Dawson
- XML (EN)
- PDF (EN)
02 Aug 2016

4(1):e31
Flow Rates in Liquid Chromatography, Gas Chromatography and Supercritical Fluid Chromatography: A Tool for Optimization

Joris Meurs
- XML (EN)
- PDF (EN)
02 Aug 2016

4(1):e32
WekaPyScript: Classification, Regression, and Filter Schemes for WEKA Implemented in Python

Christopher Beckham, Mark Hall, Eibe Frank
- XML (EN)
- PDF (EN)
08 Aug 2016

4(1):e33
The Langevin Approach: An R Package for Modeling Markov Processes

Philip Rinn, Pedro Lind, Matthias Wächter, Joachim Peinke
- XML (EN)
- PDF (EN)
23 Aug 2016

4(1):e34
An Open Framework for the Reproducible Study of the Iterated Prisoner’s Dilemma

Vincent Knight, Owen Campbell, Marc Harper, Karol Langner, James Campbell, Thomas Campbell, Alex Carney, Martin Chorley, Cameron Davidson-Pilon, Kristian Glass, Nikoleta Glynatsi, Tomáš Ehrlich, Martin Jones, Georgios Koutsovoulos, Holly Tibble, Jochen Müller, Geraint Palmer, Piotr Petunov, Paul Slavin, Timothy Standen, Luis Visintini, Karl Molden
- XML (EN)
- PDF (EN)
31 Aug 2016

4(1):e35
Caliko: An Inverse Kinematics Software Library Implementation of the FABRIK Algorithm

Alastair Lansley, Peter Vamplew, Philip Smith, Cameron Foale
- XML (EN)
- PDF (EN)
09 Sep 2016

4(1):e36
SimOutUtils – Utilities for Analyzing Time Series Simulation Output

Nuno Fachada, Vitor Lopes, Rui Martins, Agostinho Rosa
- PDF (EN)
- XML (EN)
21 Oct 2016

4(1):e38
Nansat: a Scientist-Orientated Python Package for Geospatial Data Processing

Anton Korosov, Morten Hansen, Knut-Frode Dagestad, Asuka Yamakawa, Aleksander Vines, Maik Riechert
- PDF (EN)
- XML (EN)
24 Oct 2016

4(1):e39
EDI – A Template-Driven Metadata Editor for Research Data

Fabio Pavesi, Anna Basoni, Cristiano Fugazza, Stefano Menegon, Alessandro Oggioni, Monica Pepe, Paolo Tagliolato, Paola Carrara
- PDF (EN)
- XML (EN)
25 Oct 2016

4(1):e40
Virtual Micromagnetics: A Framework for Accessible and Reproducible Micromagnetic Simulation

Mark Vousden, Marc-Antonio Bisotti, Maximilian Albert, Hans Fangohr
- PDF (EN)
- XML (EN)
31 Oct 2016

4(1):e41
MatCal: Open Source Bayesian ¹⁴C Age Calibration in Matlab

Bryan Lougheed, Stephen Obrochta
- PDF (EN)
- XML (EN)
08 Nov 2016

4(1):e42
prepdat- An R Package for Preparing Experimental Data for Statistical Analysis

Ayala Allon, Roy Luria
- PDF (EN)
- XML (EN)
25 Nov 2016

4(1):e43
eAnalytics: Dynamic Web-based Analytics for the Energy Industry

Paul Govan
- XML (EN)
- PDF (EN)
30 Nov 2016

4(1):e45

Issues in Research Software

Correction

Correction: MurCSS: A Tool for Standardized Evaluation of Decadal Hindcast Systems

Sebastian Illing, Christopher Kadow, Oliver Kunst, Ulrich Cubasch
- XML (EN)
- PDF (EN)
24 Jun 2016

4(1):e24

Issue Archive