Volume 9 -

Issue 1 - 2021

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Software Metapapers

BayesFactorFMRI: Implementing Bayesian Second-Level fMRI Analysis with Multiple Comparison Correction and Bayesian Meta-Analysis of fMRI Images with Multiprocessing

Hyemin Han
- PDF (EN)
- XML (EN)
02 Feb 2021

9(1):1
Smurf: System for Modelling with Uncertainty Reduction, and Forecasting

Isabelle Mirouze, Sophie Ricci
- PDF (EN)
- XML (EN)
05 Feb 2021

9(1):2
OpenOpticalFlow_PIV: An Open Source Program Integrating Optical Flow Method with Cross- Correlation Method for Particle Image Velocimetry

Tianshu Liu, David M. Salazar
- PDF (EN)
- XML (EN)
05 Feb 2021

9(1):3
PBTK Optimizer: An Open Source Application for PBTK Model Parameter Optimization in Python

Ian Edhlund, Matthew Macauley, Cindy Lee
- PDF (EN)
- XML (EN)
14 Apr 2021

9(1):4
VIFECO: An Open-Source Software for Counting Features on a Video

Philippe Apparicio, David Maignan, Jérémy Gelb
- PDF (EN)
- XML (EN)
07 May 2021

9(1):7
Pymrio – A Python Based Multi-Regional Input-Output Analysis Toolbox

Konstantin Stadler
- PDF (EN)
- XML (EN)
11 May 2021

9(1):8
A Python Package to Calculate the OLR-Based Index of the Madden- Julian-Oscillation (OMI) in Climate Science and Weather Forecasting

Christoph G. Hoffmann, George N. Kiladis, Maria Gehne, Christian von Savigny
- PDF (EN)
- XML (EN)
14 May 2021

9(1):9
Embo: a Python package for empirical data analysis using the Information Bottleneck

Eugenio Piasini, Alexandre L. S. Filipowicz, Jonathan Levine, Joshua I. Gold
- PDF (EN)
- XML (EN)
31 May 2021

9(1):10
FastGAPP – A MATLABBased Program Supports Earth Scientists Interpreting Geochemical, Petrological and Sedimentological Data

Florian Riefstahl, Felix Gross
- PDF (EN)
- XML (EN)
31 May 2021

9(1):11
Particle Image Velocimetry for MATLAB: Accuracy and enhanced algorithms in PIVlab

William Thielicke, René Sonntag
- PDF (EN)
- XML (EN)
31 May 2021

9(1):12
Introduction to Freva – A Free Evaluation System Framework for Earth System Modeling

Christopher Kadow, Sebastian Illing, Etor E. Lucio-Eceiza, Martin Bergemann, Mahesh Ramadoss, Philipp S. Sommer, Oliver Kunst, Thomas Schartner, Klaus Pankatz, Jens Grieger, Mareike Schuster, Andy Richling, Hannes Thiemann, Ingo Kirchner, Henning W Rust, Thomas Ludwig, Ulrich Cubasch, Uwe Ulbrich
- PDF (EN)
- XML (EN)
02 Jun 2021

9(1):13
Python Battery Mathematical Modelling (PyBaMM)

Valentin Sulzer, Scott G. Marquis, Robert Timms, Martin Robinson, S. Jon Chapman
- PDF (EN)
- XML (EN)
08 Jun 2021

9(1):14
Simple RGC: ImageJ Plugins for Counting Retinal Ganglion Cells and Determining the Transduction Efficiency of Viral Vectors in Retinal Wholemounts

Tiger Cross, Rasika Navarange, Joon-Ho Son, William Burr, Arjun Singh, Kelvin Zhang, Miruna Rusu, Konstantinos Gkoutzis, Andrew Osborne, Bart Nieuwenhuis
- PDF (EN)
- XML (EN)
09 Jun 2021

9(1):15
Palabos-npFEM: Software for the Simulation of Cellular Blood Flow (Digital Blood)

Christos Kotsalos, Jonas Latt, Bastien Chopard
- PDF (EN)
- XML (EN)
24 Jun 2021

9(1):16
CMakeCatchTemplate: A C++ template project

Thomas Dowrick, Mian Ahmad, Stephen Thompson, James Hetherington, Jonathan Cooper, Matt Clarkson
- PDF (EN)
- XML (EN)
16 Jul 2021

9(1):17
Register Transfer Level Disparity generator with Stereo Vision

Aruna Jayasena
- PDF (EN)
- XML (EN)
19 Jul 2021

9(1):18
bbsBayes: An R Package for Hierarchical Bayesian Analysis of North American Breeding Bird Survey Data

Brandon P. M. Edwards, Adam C. Smith
- PDF (EN)
- XML (EN)
20 Jul 2021

9(1):19
Go Listen: An End-to-End Online Listening Test Platform

Dan Barry, Qijian Zhang, Pheobe Wenyi Sun, Andrew Hines
- PDF (EN)
- XML (EN)
20 Jul 2021

9(1):20
SmaRT-CIT: Smartphone App for the Response Time Concealed Information Test with Ready-to-Use Android Deployment

Gáspár Lukács
- PDF (EN)
- XML (EN)
21 Jul 2021

9(1):21
DefocusTracker: A Modular Toolbox for Defocusing-based, Single-Camera, 3D Particle Tracking

Rune Barnkob, Massimiliano Rossi
- PDF (EN)
- XML (EN)
23 Jul 2021

9(1):22

Volume 9 -

Issue 1 - 2021

Software Metapapers

BayesFactorFMRI: Implementing Bayesian Second-Level fMRI Analysis with Multiple Comparison Correction and Bayesian Meta-Analysis of fMRI Images with Multiprocessing

Smurf: System for Modelling with Uncertainty Reduction, and Forecasting

OpenOpticalFlow_PIV: An Open Source Program Integrating Optical Flow Method with Cross- Correlation Method for Particle Image Velocimetry

PBTK Optimizer: An Open Source Application for PBTK Model Parameter Optimization in Python

VIFECO: An Open-Source Software for Counting Features on a Video

Pymrio – A Python Based Multi-Regional Input-Output Analysis Toolbox

A Python Package to Calculate the OLR-Based Index of the Madden- Julian-Oscillation (OMI) in Climate Science and Weather Forecasting

Embo: a Python package for empirical data analysis using the Information Bottleneck

FastGAPP – A MATLABBased Program Supports Earth Scientists Interpreting Geochemical, Petrological and Sedimentological Data

Particle Image Velocimetry for MATLAB: Accuracy and enhanced algorithms in PIVlab

Introduction to Freva – A Free Evaluation System Framework for Earth System Modeling

Python Battery Mathematical Modelling (PyBaMM)

Simple RGC: ImageJ Plugins for Counting Retinal Ganglion Cells and Determining the Transduction Efficiency of Viral Vectors in Retinal Wholemounts

Palabos-npFEM: Software for the Simulation of Cellular Blood Flow (Digital Blood)

CMakeCatchTemplate: A C++ template project

Register Transfer Level Disparity generator with Stereo Vision

bbsBayes: An R Package for Hierarchical Bayesian Analysis of North American Breeding Bird Survey Data

Go Listen: An End-to-End Online Listening Test Platform

SmaRT-CIT: Smartphone App for the Response Time Concealed Information Test with Ready-to-Use Android Deployment

DefocusTracker: A Modular Toolbox for Defocusing-based, Single-Camera, 3D Particle Tracking

Issues in Research Software

Sustainable Research Software Hand-Over

oemof.tabular – Introducing Data Packages for Reproducible Workflows in Energy System Modeling

Issue Archive

Volume 9 - Issue 1 - 2021

Volume 8 - Issue 1 - 2020

Volume 7 - Issue 1 - 2019

Volume 6 - Issue 1 - 2018

Volume 5 - Issue 1 - 2017

Volume 4 - Issue 1 - 2016

Volume 3 - Issue 1 - 2015

Volume 2 - Issue 1 - 2014

Volume 1 - Issue 1 - 2013